PREGO is an algorithm that reconstructs a cancer genome as a rearrangement of segments, or intervals, from the reference genome using paired-end sequencing data.
The algorithm is described in the following paper:
L. Oesper, A. Ritz, S.J. Aerni, R. Drebin, and B.J. Raphael. (2012) Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinformatics. 13(Suppl 6):S10. Publisher Link
Preliminary version accepted at 2nd Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq)
These are for archival purposes. It is recommended to download the latest version from the link above.